Branching patterns of the afferent branchial arteries and their phylogenetic significance in rays (Batoidea).

Rays of the superorder Batoidea comprise the most diverse group of chondrichthyans in terms of valid species and morphological disparity. Up to the present little agreement is observed in studies based on morphological and molecular data focused on uncovering the interrelationships within Batoidea. Morphology-based phylogenies of batoids have not included characters related to the afferent branchial arteries, and little is known about the variation in this anatomical complex in rays. Herein, representatives of 32 genera from 19 families currently recognized of rays were examined as well as some shark taxa. Seven new characters are proposed and tested in two different analyses, one on their own and in the other they were added to the morphological data matrix of the most recent analysis of interrelationships within Batoidea. The arrangement of afferent branchial arteries differs mainly among orders and families of batoids. The absence of a common trunk from which the three posteriormost afferent arteries branch is interpreted as a synapomorphy for Myliobatiformes and the presence of a coronary cranial artery as an autapomorphy for Mobula hypostoma. A close spatial relationship between the second and third afferent arteries within the common branch from the ventral aorta is proposed as a synapomorphy for Rajiformes with a secondary modification in Sympterygia. Data about patterns in afferent branchial arteries in additional taxa such as Squaliformes and Chimaeriformes are needed to better understand the evolution of this character complex among chondrichthyans.

Evaluating artisanal fishing of globally threatened sharks and rays in the Bay of Bengal, Bangladesh.

Sharks and rays are at risk of extinction globally. This reflects low resilience to increasing fishing pressure, exacerbated by habitat loss, climate change, increasing value in a trade and inadequate information leading to limited conservation actions. Artisanal fisheries in the Bay of Bengal of Bangladesh contribute to the high levels of global fishing pressure on elasmobranchs. However, it is one of the most data-poor regions of the world, and the diversity, occurrence and conservation needs of elasmobranchs in this region have not been adequately assessed. This study evaluated elasmobranch diversity, species composition, catch and trade within the artisanal fisheries to address this critical knowledge gap. Findings show that elasmobranch diversity in Bangladesh has previously been underestimated. In this study, over 160000 individual elasmobranchs were recorded through landing site monitoring, comprising 88 species (30 sharks and 58 rays) within 20 families and 35 genera. Of these, 54 are globally threatened according to the IUCN Red List of Threatened Species, with ten species listed as Critically Endangered and 22 species listed as Endangered. Almost 98% juvenile catch (69-99% for different species) for large species sand a decline in numbers of large individuals were documented, indicating unsustainable fisheries. Several previously common species were rarely landed, indicating potential population declines. The catch pattern showed seasonality and, in some cases, gear specificity. Overall, Bangladesh was found to be a significant contributor to shark and ray catches and trade in the Bay of Bengal region. Effective monitoring was not observed at the landing sites or processing centres, despite 29 species of elasmobranchs being protected by law, many of which were frequently landed. On this basis, a series of recommendations were provided for improving the conservation status of the elasmobranchs in this region. These include the need for improved taxonomic research, enhanced monitoring of elasmobranch stocks, and the highest protection level for threatened taxa. Alongside political will, enhancing national capacity to manage and rebuild elasmobranch stocks, coordinated regional management measures are essential.

Description of a new species of giant guitarfish, Glaucostegus younholeei sp. nov. (Rhinopristiformes: Glaucostegidae) from the northern Bay of Bengal, Bangladesh.

A new species of giant guitarfish, Glaucostegus younholeei sp. nov., is described from 13 specimens, 730933 mm total length, collected from fish landing center of Bangladesh Fisheries Development Corporation in Cox's Bazar district of Bangladesh. The new species is distinguished from congeners in having the following combination of characters: Body brownish or greyish in color with a narrowly wedge-shaped disc, and long narrow bluntly pointed snout (angle 3140°), and broad oblique nostrils with the narrow anterior opening. Nostrils about half of the mouth width, subequal (0.981.33) to internasal width; ~5557 nasal lamellae; anterior nasal flaps slightly penetrating into internasal space, their interspace 2.20 2.61 in length of the posterior nasal aperture. Orbit very small in adults, diameter 8.1911.62 in preorbital length, 2.252.69 in interorbital space. Rostral ridges almost joined along their entire length; margin of cranium sharply demarcated before eyes. Spiracular folds very short and widely separated. Skin rough, densely covered with small denticles, more coarsely granular on the dorsal surface than ventrally, enlarged between orbits and in a distinct band between nape and first dorsal fin. Tail relatively longer, length 1.151.48 in disc length; dorsal fins narrowly spaced, interspace 1.322.11 in base length of the first dorsal fin. Clasper length in adult male 4.375.70 in total length. Phylogenetic analysis of DNA barcode sequences also shows the clear divergence of Glaucostegus younholeei from other congeneric species obtained from GenBank. A key is provided to the 8 known members including new species of the genus Glaucostegus.

Raja mauritaniensis: a replacement name for Raja africana Capapé, 1977 (Rajiformes: Rajidae), a junior homonym of Raja africana Bloch amp; Schneider, 1801 (Myliobatiformes: Dasyatidae).

Raja africana Capapé, 1977 is a primary junior synonym of Raja africana Bloch Schneider, 1801 and therefore permanently invalid (International Code of Zoological Nomenclature, article 57.2) and must be replaced. Raja africana Bloch Schneider, 1801 was first described by Bloch Schneider (1801: 367), based on a specimen from Guinea, West Africa (eastern Atlantic Ocean). The unique holotype is extant in the Zoologisches Museum of the Humboldt University, Berlin (ZMB 7837, a partial dry skin). The species was treated as valid as Urogymnus africanus (Bloch Schneider 1801) by Compagno Roberts (1984: 285), but later synonymized with Urogymnus asperrimus (Bloch Schneider 1801) in the subfamily Urogymninae of the family Dasyatidae (Myliobatiformes) by Compagno (1986: 141), Capapé Desoutter (1990: 63) and Séret (2016: 1418). It is widespread in the eastern Atlantic, Red Sea and IndoWest Pacific.

Notes on batoid fishes of the Socotra Archipelago (north-western Indian Ocean), with four new records.

The species composition of batoid fishes from coastal waters of the Socotra Archipelago is reviewed, with confirmed records of the wedgefish Rhynchobatus djiddensis (Forsskål, 1775) and four new records of sharkrays, wedgefishes, and guitarfishes based on collected specimens, including one species from Abd al-Kuri Island, Rhina ancylostoma Bloch Schneider, 1801 (Rhinidae), and three species from the main island Socotra, Acroteriobatus salalah (Randall Compagno, 1995) and Rhinobatos punctifer Compagno Randall, 1987 (Rhinobatidae), and Rhynchobatus australiae Whitley, 1939 (Rhinidae). Among the new records for the Socotra Archipelago, R. australiae represents the first verified record for the Arabian region. In addition, records of four stingray species (Dasyatidae) are verified based on underwater observations accompanied with photographs. All recorded batoid fishes are commercial species caught in the local small-scale fishery. Information on the identification and distribution of each species is provided.

Complete Mitochondrial DNA Genome of Nine Species of Sharks and Rays and Their Phylogenetic Placement among Modern Elasmobranchs.

Chondrichthyes occupy a key position in the phylogeny of vertebrates. The complete sequence of the mitochondrial genome (mitogenome) of four species of sharks and five species of rays was obtained by whole genome sequencing (DNA-seq) in the Illumina HiSeq2500 platform. The arrangement and features of the genes in the assembled mitogenomes were identical to those found in vertebrates. Both Maximum Likelihood (ML) and Bayesian Inference (BI) analyses were used to reconstruct the phylogenetic relationships among 172 species (including 163 mitogenomes retrieved from GenBank) based on the concatenated dataset of 13 individual protein coding genes. Both ML and BI analyses did not support the "Hypnosqualea" hypothesis and confirmed the monophyly of sharks and rays. The broad notion in shark phylogeny, namely the division of sharks into Galeomorphii and Squalomorphii and the monophyly of the eight shark orders, was also supported. The phylogenetic placement of all nine species sequenced in this study produced high statistical support values. The present study expands our knowledge on the systematics, genetic differentiation, and conservation genetics of the species studied, and contributes to our understanding of the evolutionary history of Chondrichthyes.

Coastal sharks and rays in a marine protected area in southern Brazil.

In southern Brazil, we investigated shark and ray capture records in an integral protection marine protection area (MPA) that allows fishing in that area. We found 10 shark and nine ray species, of which 88.5% and 66.2%, respectively, are endangered. Female adults and neonates of both sexes are abundant in the area, with records of stranding of large specimens, postcapture abortions and ovigerous capsules with fresh embryos on the beach. We suggest the application of continuous fisheries monitoring and an increase in guidelines on the capture of endangered species.

Genetic evidence supports a range extension for the Brazilian cownose ray Rhinoptera brasiliensis in the western North Atlantic.

We report 24 new records of the Brazilian cownose ray Rhinoptera brasiliensis outside its accepted geographic range. Sequencing of a 442-base pair portion of the mitochondrial NADH dehydrogenase subunit 2 gene for 282 Rhinoptera samples revealed eight records off the east coast of the USA and 16 from the eastern Gulf of Mexico. Both sexes of all life stages were documented in all seasons over multiple years in the Indian River and Lake Worth lagoons, Florida, indicating that their range extends further in the western North Atlantic than previously described.

First record of Gorgona guitarfish (Pseudobatos prahli) off the Baja California peninsula with updated key to the guitarfishes of the North Eastern Pacific.

The Gorgona guitarfish is a poorly documented ray found in the Eastern Pacific. It can be distinguished from its congeners due to its distinctive coloration and rostral cartilages. Here I document an extensive northern range expansion of almost 2000 km based on a juvenile specimen caught off the Baja California Peninsula. This specimen also represents the smallest documented individual of this species, along with the first quantitative morphometric data reported since the 1995 description. Additionally, an updated key to the guitarfishes of the North Eastern Pacific is included.

Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings.

Bacterial communities of two critically endangered rays from the South Atlantic, the butterfly ray (Gymnura altavela) and the groovebelly ray (Dasyatis hypostigma), were described using 16S rRNA gene metabarcoding. The study characterized the bacterial communities associated with (i) G. altavela in natural (in situ) and aquarium (ex situ) settings, (ii) skin and stinger of G. altavela, and D. hypostigma in aquaria, and (iii) newborns and adults of D. hypostigma. The results revealed potentially antibiotic-producing bacterial groups on the skin of rays from the natural environment, and some taxa with the potential to benefit ray health, mainly in rays from the natural environment, as well as possible pathogens to other animals, including fish and humans. Differences were observed between the G. altavela and D. hypostigma bacteria composition, as well as between the skin and stinger bacterial composition. The bacterial community associated with D. hypostigma changed with the age of the ray. The aquarium environment severely impacted the G. altavela bacteria composition, which changed from a complex bacterial community to one dominated almost exclusively by two taxa, Oceanimonas sp. and Sediminibacterium sp. on the skin and stinger, respectively.

Catch composition and life history characteristics of sharks and rays (Elasmobranchii) landed in the Andaman and Nicobar Islands, India.

Detailed information on shark and ray fisheries in the Andaman and Nicobar Islands, India are limited, including information on the diversity and biological characteristics of these species. We carried out fish landing surveys in South Andamans from January 2017 to May 2018, a comprehensive and cost-effective way to fill this data gap. We sampled 5,742 individuals representing 57 shark and ray species landed from six types of fishing gears. Of the 36 species of sharks and 21 species of rays landed, six species of sharks (Loxodon macrorhinus, Carcharhinus amblyrhynchos, Sphyrna lewini, C. albimarginatus, C. brevipinna, and Paragaleus randalli) comprised 83.35% of shark landings, while three species of rays (Pateobatis jenkinsii, Himantura leoparda and H. tutul) comprised 48.82% of ray landings, suggesting a species dominance in the catch or fishing region. We provide insights into the biology of species with extensions in maximum size for seven shark species. Additionally, we document an increase in the known ray diversity for the islands and for India with three previously unreported ray species. We found that amongst sharks, mature individuals of small-bodied species (63.48% males of total landings of species less than 1.5 m total length when mature) and immature individuals of larger species (84.79% males of total landings of species larger than 1.5 m total length when mature) were mostly landed; whereas for rays, mature individuals were predominantly landed (80.71% males of total landings) likely reflecting differences in habitat preferences along life-history stages across species and fishing gear. The largest size range in sharks was recorded in landings from pelagic longlines and gillnets. Further, the study emphasizes the overlap between critical habitats and fishing grounds, where immature sharks and gravid females were landed in large quantities which might be unsustainable in the long-term. Landings were female-biased in C. amblyrhynchos, S. lewini and P. jenkinsii, and male-biased in L. macrorhinus and H. leoparda, indicating either spatio-temporal or gear-specific sexual segregation in these species. Understanding seasonal and biological variability in the shark and ray landings over a longer study period across different fisheries will inform future conservation and fishery management measures for these species in the Andaman and Nicobar Islands.

Integrative taxonomy identifies a new stingray species of the genus Hypanus Rafinesque, 1818 (Dasyatidae, Myliobatiformes), from the Tropical Southwestern Atlantic.

An integrative approach by the congruence of genetics, morphology and ecological niche modelling (ENM) was used to delimit a new species of Hypanus (Rafinesque, 1818), a recently resurrected genus of marine stingrays comprising eight species, five of which occur in the western Atlantic. The species with the widest distribution, Hypanus americanus (Hildebrand and Schroeder, 1928), from the northeastern coast of the United States to southeastern Brazil, was demonstrated to be paraphyletic based on protein-coding mitochondrial genome analyses. This data set also indicates that the genetic distance between the new species Hypanus berthalutzae sp. nov. and its three closely related species (H. americanus, H. longus and H. rudis) varies from 0.82% to 3.14%. In addition, Bayesian Analysis of Population Similarity using the mitochondrial gene mt-nd2 supports the separation of H. berthalutzae sp. nov. (southwestern Atlantic) from its sister species H. rudis (eastern Atlantic). Similarly, morphological and morphometric analyses corroborated four morphotypes within the H. americanus species group and indicated the ventral caudal fold height and length and interspiracular and interorbital lengths as useful measurements to distinguish among them. Claspers of adult males also exhibit morphological differences among species. The ENM agreed with molecular and morphological analyses and delimits the distribution of H. berthalutzae sp. nov. to shallow areas close to shore along the Brazilian coast, from the mouth of the Amazon River to São Paulo State, including the northeastern oceanic islands, suggesting that the great outflow of fresh water and sediments and the Mid-Atlantic Ridge might act as barriers. The integration of these data to describe a new species provides information relevant to their conservation status, because all species of the H. americanus species group are under the "data-deficient" status.

Life-history, exploitation and extinction risk of the data-poor Baraka's whipray (Maculabatis ambigua) in small-scale tropical fisheries.

The Baraka's whipray (Maculabatis ambigua) is a major constituent of small-scale fisheries catch in the south-western Indian Ocean. Despite this, little is known of its life-history or exploitation status. We provide the first estimates of crucial life-history parameters and the maximum intrinsic population growth rate rmax , using specimens collected from small-scale fisheries landings in Kenya, Zanzibar and Madagascar (with northern Madagascar representing a range extension for this species). We assess the relative risk of overexploitation by combining rmax with estimates of total Z, fishing F, and natural M mortality, and an estimate of the exploitation ratio E. The data indicate that Baraka's whipray is a medium-sized, fast-growing, early maturing species, with a relatively long lifespan. This results in a high rmax relative to many other elasmobranchs, which when combined with estimates of F suggests that the species is not at imminent risk of extinction. Yet, estimates of exploitation ratio E indicate likely overfishing for the species, with full recruitment to the fishery being post-maturation and exploitation occurring across a broad range of age and size classes. Thus, Baraka's whipray is unlikely to be biologically sustainable in the face of current fisheries pressures. This paper makes an important contribution to filling the gap in available data and is a step towards developing evidence-based fisheries management for this species. Further, it demonstrates a simple and widely applicable framework for assessment of data-poor elasmobranch exploitation status and extinction risk.

Trophic niche partitioning of five skate species of genus Bathyraja in northern and central Patagonia, Argentina.

Overexploitation of marine communities can lead to modifications in the structure of the food web and can force organisms like elasmobranchs to change their feeding habits. To evaluate the impact that fisheries have on food webs and on the interactions between species, it is necessary to describe and quantify the diet of the species involved and follow it through time. This study compares the diet of five skate species using the data obtained from the by-catch of the Argentine hake (Merluccius hubbsi) fishery in north and central Patagonia, Argentina. Diet composition was assessed by analysing the digestive tract contents and trophic overlapping between species of the genus Bathyraja: Bathyraja albomaculata, Bathyraja brachyurops, Bathyraja macloviana, Bathyraja magellanica and Bathyraja multispinis. A total of 184 stomachs were analysed. The diets of B. albomaculata and B. macloviana mainly comprised annelids, whereas that of B. brachyurops primarily comprised fish, including hake heads discarded by the fishery. The diets of B. magellanica and B. multispinis were largely based on crustaceans. Despite the morphological similarities and their shared preference for benthic habitats, no complete diet overlaps were found between the different species. These results suggest that these skate species have undergone a process of diet specialisation. This is a common feeding strategy that occurs to successfully eliminate competition when resources are limited, which corresponds to the conditions found in an environment being affected by the pressures of overfishing.

Linking local movement and molecular analysis to explore philopatry and population connectivity of the southern stingray Hypanus americanus.

Limited data pertaining to life history and population connectivity of the data-deficient southern stingray (Hypanus americanus) are available. To determine potential vulnerabilities of their populations, this study aimed to analyse their movement patterns and genetic variability. A population of southern stingrays encompassing nine sites around Cape Eleuthera, the Bahamas, has been monitored using mark-recapture, spanning a 2.5 year period. Out of 200 individual stingrays, more than a third were encountered again. The home range of the females appears to be restricted, which supports the notion of high site residency. As resident populations of stingrays could suffer from a lack of population connectivity and be predestined for genetic isolation and local extirpation, this study further investigated the genetic connectivity of four sample sites in the central and western Bahamas. A haplotype analysis from the mitochondrial D-loop region showed that no distinct population structure strictly correlated with the sample site. These findings were complemented by five microsatellite loci that revealed high degrees in genotypic variability and little population differentiation. The results suggest gene flow mediated by both males and females.

Computer-aided photo-identification of a rare stingray, Megatrygon microps.

A protocol for photo-identification of individual Megatrygon microps has been defined. One hundred and four identification photographs were taken between 2005 and 2019. Spot patterns on the dorsal surface were used to identify individuals. Unique scarring on eight M. microps re-observed provided an independent confirmation of pattern stability of up to 761 days. Previous studies lacked statistical testing used to validate this photo-identification approach. I3 S photo-matching software was used to successfully match images, identifying 69 individuals. A photo-matching software facilitates an open-source platform for identifying individual M. microps, allowing for better population assessments.

Dancing with the devil: courtship behaviour, mating evidences and population structure of the Mobula tarapacana (Myliobatiformes: Mobulidae) in a remote archipelago in the Equatorial Mid-Atlantic Ocean

The present work aimed at studying the sicklefin devil ray (Mobula tarapacana) that aggregates seasonally in the Saint Peter and Saint Paul Archipelago (SPSPA). From December 2008 to June 2016, 827 rays were sighted through free diving visual census survey. From the total of the records, it was possible to identify the sex of 361 specimens, in which 215 were females and 146 were males. The disk width ranged from 2.40 m to 3.20 m with mean size of 2.60 m, for both males and females, indicating that the population is composed by sub-adults and adults. Using photo-identification of the pectoral-fins in the ventral side, 11 males and 44 females were identified and compared with each other, but no re-sight was detected. Recent mating scars were observed in males (n= 7) and females (n= 6), as well as courtship and pursuit behaviors, confirming that the SPSPA is an important area of aggregation and mating for M. tarapacana in the Atlantic Ocean.(AU)

O presente trabalho teve como objetivo conhecer a população da raia manta chilena (Mobula tarapacana) que forma agregações sazonais no Arquipélago de São Pedro e São Paulo (ASPSP). Durante o período de dezembro de 2008 a junho de 2016, foram avistadas 827 raias através de censo visual por mergulho livre. Do total das raias avistadas, foi possível identificar o sexo de 361 espécimes, dos quais 215 eram fêmeas e 146 eram machos. A largura de disco variou de 2,40 m a 3,20 m, com média de 2,60 m, tanto para machos como para fêmeas, evidenciando que a população é composta por adultos e sub-adultos. Com base na foto-identificação do padrão de coloração do contorno localizado na região ventral, foram identificados e comparados entre si, 11 machos e 44 fêmeas, não tendo sido observada, porém, nenhuma reavistagem. Marcas de cópula recente foram observadas tanto em machos (n= 7) como em fêmeas (n= 6). Comportamentos de corte e perseguição também foram observados, indicando que o ASPSP é uma importante área de agregação e acasalamento da espécie no Oceano Atlântico.(AU)

Updated taxonomic list and conservation status of chondrichthyans from the exclusive economic zone of Venezuela, with first generic and specific records.

Using the last taxonomic review of chondrichthyans of the world, we selected the species distributed in the north-western Atlantic Ocean (NWA) and compared it with the available published literature related to the class Chondrichthyes in the Venezuelan exclusive economic zone. We also revised information from worldwide databases such as: FAO (NWA-31 area), GBIF, iSpecies, IUCN and OBIS, as well as available museum collection databases. The taxonomic validity was checked using the Catalogue of Fishes of the California Academy of Sciences and recent references. The past published Venezuelan lists of chondrichthyans combined included nine orders, 30 families and 108 species. The updated list with 12 orders, 36 families and 122 species increased by three new orders, six families, three shark genera, nine shark species (one replacing another species), one chimaera genus, two chimaera species, three batoid genera and six batoid species (two replacing other species). Four holotype specimens (two sharks and two rays) are deposited in Venezuelan Museums. Most of the species have an IUCN conservation status, including four species catalogued as Critically Endangered, six as Endangered and 18 species as Vulnerable. Deep-sea fisheries, scientific exploration and taxonomic/genetic revisions might add future increments to the Venezuelan chondrichthyan list.

Divergence, evolution and adaptation in ray-finned fish genomes.

With the rapid development of next-generation sequencing technologies and bioinformatics, over 50 ray-finned fish genomes by far have been sequenced with high quality. The genomic work provides abundant genetic resources for deep understanding of divergence, evolution and adaptation in the fish genomes. They are also instructive for identification of candidate genes for functional verification, molecular breeding, and development of novel marine drugs. As an example of other omics data, the Fish-T1K project generated a big database of fish transcriptomes to integrate with these published fish genomes for potential applications. In this review, we highlight the above-mentioned recent investigations and core topics on the ray-finned fish genome research, with a main goal to obtain a deeper understanding of fish biology for theoretical and practical applications.

Potamotrygon marquesi, a new species of neotropical freshwater stingray (Potamotrygonidae) from the Brazilian Amazon Basin.

Potamotrygon marquesi, sp. nov., is described and compared with other species of Potamotrygon occurring in the Amazon Basin. The identity of this new species is supported by an extensive external and internal morphological study including coloration pattern, squamation, skeleton and ventral lateral-line canals. Morphometrics and meristics were used to further distinguish P. marquesi from congeners. Potamotrygon marquesi was first considered to fall within the range of variation found in P. motoro. However, even with an extensive variation in coloration observed in P. motoro, this new species presents a series of autapomorphies that confidently distinguishes it from what is understood as the morphological variation found in P. motoro. Additional morphological characters that diagnose P. marquesi include three angular cartilages, asymmetrical star-shaped denticles, a single regular row of spines on tail dorsum, lateral row of caudal spines near the sting insertion, dorsal disc background in beige and grey mixed with shades of grey and bearing open and closed bicolored rings, among others. Although presenting a gap of distribution along the west-east extension of the Amazon Basin, its diagnostic charactistics are consistent in both recorded regions. Our study supports the need for many morphological characters to robustly distinguish members of Potamotrygoninae considering their extremely variable dorsal disc color pattern.